| Platinum | Director of the FBC | Unlock all other trophies | 5.4% Very Rare | 436 pts |
| Silver | Astral Tactician | Complete 25 Board Countermeasures | 6.5% Very Rare | 146 pts |
| Bronze | Volatile Debris | Kill 10 enemies with the Shield Burst Ability | 7.3% Very Rare | 91 pts |
| Gold | Master Parautilitarian | Spend 100 Ability Points | 9.8% Very Rare | 153 pts |
| Bronze | Head of Communications | Defeat Mr. Tomassi | 11% Rare | 71 pts |
| Silver | Crisis Management | Complete 5 Bureau Alerts | 11.3% Rare | 105 pts |
| Silver | FBC Crisis Solution Task Force | Complete 15 Side Missions | 12.6% Rare | 98 pts |
| Bronze | Aggressive Growth | Defeat Mold-1 | 13.5% Rare | 63 pts |
| Bronze | Altered Manifestations May Occur | Defeat esseJ | 13.9% Rare | 62 pts |
| Bronze | Inter-Departmental Cooperation | Complete 10 Side Missions | 15.4% Rare | 58 pts |
| Bronze | Living Archetypes | Defeat the Anchor | 16.1% Rare | 57 pts |
| Bronze | War Games | Complete 5 Board Countermeasures | 16.4% Rare | 56 pts |
| Bronze | Expert Parautilitarian | Spend 50 Ability Points | 17.3% Rare | 54 pts |
| Silver | Interdimensional Defender | Killed 1000 Hiss | 18.6% Rare | 78 pts |
| Gold | Take Control | Complete Mission 10 | 18.9% Rare | 103 pts |
| Bronze | Polaris | Complete Mission 9 | 19% Rare | 51 pts |
| Silver | Non-Standard Issue | Upgrade any Weapon Form to Level 3 | 19.1% Rare | 77 pts |
| Silver | Astral Phenomena | Defeat Former | 19.1% Rare | 77 pts |
| Bronze | Finnish Tango | Complete Mission 8 | 19.5% Rare | 50 pts |
| Silver | Discerning the Pattern | Cleanse 25 Control Points | 20.3% Uncommon | 74 pts |
| Bronze | The Face of the Enemy | Complete Mission 7 | 20.7% Uncommon | 49 pts |
| Bronze | Cognitive Intruder | Compel 10 enemies with the Seize Ability | 21.2% Uncommon | 48 pts |
| Bronze | The Importance of Synergy | Complete 5 Side Missions | 21.4% Uncommon | 48 pts |
| Silver | Career Development | Unlock all 3 Personal Mod slots | 22.4% Uncommon | 70 pts |
| Bronze | First On the Scene | Complete 1 Bureau Alert | 22.4% Uncommon | 46 pts |
| Bronze | My Brother's Keeper | Complete Mission 6 | 22.9% Uncommon | 46 pts |
| Bronze | Psychic Occupation | Obtain the Compel Ability | 23% Uncommon | 46 pts |
| Bronze | Rising Thought | Obtain the Levitate Ability | 23% Uncommon | 46 pts |
| Gold | Bureau Archivist | Collect 120 Collectibles | 23.4% Uncommon | 90 pts |
| Bronze | Threshold | Complete Mission 5 | 24.4% Uncommon | 44 pts |
| Silver | Paranatural Collection | Collect more than 100,000 Source | 24.7% Uncommon | 66 pts |
| Bronze | Insular Telekinesis | Obtain the Shield Ability | 25.9% Uncommon | 43 pts |
| Bronze | Proper Handling Procedures | Use Launch to throw a grenade or rocket | 26.4% Uncommon | 42 pts |
| Bronze | Old Boys' Club | Complete Mission 4 | 26.4% Uncommon | 42 pts |
| Bronze | Record Keeper | Collect 80 Collectibles | 27.8% Uncommon | 41 pts |
| Bronze | Ritual Intuition | Cleanse 10 Control Points | 28% Uncommon | 41 pts |
| Bronze | Unstable Matter | Kill 50 enemies with the Launch Ability | 30.5% Uncommon | 39 pts |
| Bronze | Directorial Override | Complete Mission 3 | 31.2% Uncommon | 38 pts |
| Bronze | Shifting Positions | Obtain the Evade Ability | 34.9% Uncommon | 36 pts |
| Bronze | Ritualistic Thinking | Cleanse 5 Control Points | 35.8% Uncommon | 35 pts |
| Bronze | Astral Construction | Construct a Weapon Form or Mod | 39.4% Uncommon | 33 pts |
| Bronze | Parautilitarian | Unlock 1 Ability Tree Upgrade | 40.6% Common | 33 pts |
| Bronze | Unknown Caller | Complete Mission 2 | 42.1% Common | 32 pts |
| Bronze | Strange Collection | Collect 40 Collectibles | 42.3% Common | 32 pts |
| Bronze | Paranatural Powerhouse | Obtain the Launch Ability | 50.8% Common | 28 pts |
| Bronze | Welcome to the Oldest House | Complete Mission 1 | 61.6% Common | 25 pts |
| Bronze | Choose to be Chosen | Obtain the Service Weapon | 82.2% Common | 21 pts |