| Platinum | Revengeance | Obtain all Trophies. | 0.8% Ultra Rare | 4,116 pts |
| Gold | Stormbringer | Complete story mode on Revengeance difficulty with all S rankings. | 0.9% Ultra Rare | 1,917 pts |
| Gold | Virtually Flawless | Set the highest score on every VR Mission. | 1.2% Ultra Rare | 1,613 pts |
| Gold | Amateur Radio Operator | Listen to most of the codec conversations. | 1.3% Ultra Rare | 1,538 pts |
| Silver | The Politics of Silencing Foes | Defeat Sen. Armstrong without taking any damage on Hard difficulty or above. | 1.3% Ultra Rare | 1,153 pts |
| Bronze | VR Master | Complete every VR Mission. | 1.3% Ultra Rare | 769 pts |
| Bronze | Ich Liebe Kapitalismus! | Acquire all customization items. | 1.3% Ultra Rare | 769 pts |
| Silver | Genius Destroyer | Defeat Monsoon without taking any damage on Hard difficulty or above. | 1.5% Ultra Rare | 1,058 pts |
| Silver | Truly Human | Defeat Sundowner without taking any damage on Hard difficulty or above. | 1.6% Ultra Rare | 1,018 pts |
| Silver | Chosen by History | Defeat Samuel without taking any damage on Hard difficulty or above. | 1.8% Ultra Rare | 949 pts |
| Bronze | Tearing Away the Disguise | Destroy all of the humanoid Dwarf Gekkos during story mode. | 2% Ultra Rare | 594 pts |
| Bronze | Surprise Attack! | Arrive at the objective in File R-07 without being spotted. | 2.3% Ultra Rare | 546 pts |
| Bronze | Demilitarized Zone | Destroy a total of 100 Heavily Armed Cyborgs during story mode. | 2.4% Ultra Rare | 532 pts |
| Silver | Prodigal Murderer | Defeat Mistral without taking any damage on Hard difficulty or above. | 2.5% Ultra Rare | 779 pts |
| Bronze | A Lover, Not a Fighter | Successfully complete 10 No Kill battles during story mode. | 2.8% Ultra Rare | 485 pts |
| Bronze | Analysis Complete | Unlock every VR Mission. | 3.4% Ultra Rare | 432 pts |
| Bronze | Data Mining | Acquire all data storage devices. | 3.6% Ultra Rare | 417 pts |
| Bronze | A Big Fan of Lefties | Acquire all enemy officers' left arms. | 4.6% Ultra Rare | 360 pts |
| Bronze | Humanitarian Assistance | Rescue all the civilians. | 6% Very Rare | 307 pts |
| Bronze | Great Escape | Complete File R-05 in less than 7 minutes. | 6.2% Very Rare | 301 pts |
| Bronze | Love at First Sight | While remotely operating a Dwarf Gekko in story mode, find and communicate with all Dwarf Gekkos. | 6.5% Very Rare | 293 pts |
| Bronze | Peekaboo | Discover all of the soldiers hidden in cardboard boxes. | 6.9% Very Rare | 282 pts |
| Bronze | Menace to Society | Cut off the finial at the top of the pagoda in File R-04. | 7.3% Very Rare | 273 pts |
| Bronze | The Bigger They Are... | Destroy a total of 100 Custom Cyborgs during story mode. | 8.5% Very Rare | 249 pts |
| Bronze | Steel Tail | Cut off Metal Gear RAY's metal tail during File R-00. | 8.6% Very Rare | 247 pts |
| Bronze | A Walk in the Dark | Complete the abandoned railroad sequence in File R-03 without using AR Mode. | 10.8% Rare | 216 pts |
| Bronze | No Flash Photography! | Destroy all the Gun Cameras in File R-01. | 16.3% Rare | 169 pts |
| Bronze | Jumping the Shark | Destroy a total of 10 Hammerheads during story mode. | 19.4% Rare | 152 pts |
| Bronze | Wolf Hunter | Destroy a total of 10 Fenrirs during story mode. | 21.6% Uncommon | 142 pts |
| Bronze | You Don't Run from Chance | Successfully complete 50 Executions during story mode.
| 26.9% Uncommon | 125 pts |
| Bronze | Assassin Behind Closed Doors | Successfully complete 30 Ninja Kills during story mode. | 28.8% Uncommon | 120 pts |
| Bronze | Dwarf Raiden | Incapacitate all the soldiers in File R-02 using a Dwarf Gekko. | 32.7% Uncommon | 111 pts |
| Bronze | Assault with a Deadly Weapon | Dismember three enemies during Blade Mode with a single attack.
| 37.8% Uncommon | 102 pts |
| Bronze | File R-07: Status - Closed | Complete File R-07: Assassination Attempt. | 40.4% Common | 98 pts |
| Bronze | Pond Scum | Destroy a total of 5 Vodomjerka during story mode. | 40.8% Common | 97 pts |
| Bronze | Extinction Level Event | Destroy a total of 10 Raptors during story mode. | 46.9% Common | 89 pts |
| Bronze | File R-06: Status - Closed | Complete File R-06: Badlands Showdown. | 47.5% Common | 89 pts |
| Bronze | File R-05: Status - Closed | Complete File R-05: Escape From Denver. | 48.8% Common | 87 pts |
| Bronze | File R-04: Status - Closed | Complete File R-04: Hostile Takeover. | 49.8% Common | 86 pts |
| Bronze | Rip 'Em Apart! | In story mode, kill 100 enemies by cutting them.
| 49.9% Common | 86 pts |
| Bronze | What Doesn't Kill You... | In story mode, successfully parry 10 attacks in a row in one minute or less. | 50.8% Common | 85 pts |
| Bronze | Herpetophobia | Destroy a total of 10 Gekkos during story mode. | 53.2% Common | 83 pts |
| Bronze | Datsu Right | Successfully complete 50 Zandatsus during story mode. | 54.3% Common | 82 pts |
| Bronze | Slider Strike | Destroy a total of 10 Sliders during story mode. | 54.5% Common | 82 pts |
| Bronze | File R-03: Status - Closed | Complete File R-03: Mile High. | 55% Common | 81 pts |
| Bronze | Silverback | Destroy a total of 10 Mastiffs during story mode. | 55.8% Common | 81 pts |
| Bronze | Anti-Cyborg Sentiment | Destroy a total of 100 Cyborgs during story mode. | 59.2% Common | 78 pts |
| Bronze | File R-02: Status - Closed | Complete File R-02: Research Facility. | 60% Common | 77 pts |
| Bronze | Looking Out for the Little Guys | Destroy a total of 30 Dwarf Gekkos during story mode.
| 65.9% Common | 73 pts |
| Bronze | File R-01: Status - Closed | Complete File R-01: Coup d'État. | 66.4% Common | 73 pts |
| Bronze | File R-00: Status - Closed | Complete File R-00: Guard Duty. | 84.8% Common | 63 pts |